Open tools for
reproducible CDS design.
From protein sequence to reviewable CDS candidates and pre-synthesis sequence review.
Open-source, reproducible, and citable.
pip install factorforge-cdsconda install factorforge-cdssoondocker pull ghcr.io/eijex/factorforge-cds:latestBenchmark: v3.2.0 balanced profile · N. benthamiana SGN CDS · N=49,257 · current app default: NbeV1.1 HC CDS-derived
eijex builds reproducible, evidence-linked software infrastructure for plant molecular expression — open-source where possible, evidence-bounded by design, and freely available to the research community.
Objective
Reproducible infrastructure for plant molecular expression.
Eijex develops evidence-linked research software for plant molecular expression research. We start with open-source, constraint-aware CDS design through FactorForge and build toward reviewable design packages, validation-data capture, and pre-synthesis review artifacts.
Our public work is intentionally evidence-bounded: computational CDS design outputs support expert review before synthesis, cloning, experimental testing, or wet-lab validation. They are design-review artifacts, not experimental validation, regulatory advice, or comparative biological-performance evidence.
Capability roadmap
- 1Reproducible CDS design and reviewable validation artifacts
- 2Benchmark governance with explicit evidence boundaries
- 3Pre-synthesis review harnesses for synthesis, cloning, and experimental planning
- 4Validation-data capture, audit trails, and documented research decisions
- 5Human-supervised AI-assisted Design-Build-Test-Learn workflows
Products
Tools built for the bench and the pipeline.
FactorForge
CDS Design Review
Pre-synthesis sequence review for plant CDS workflows. Generates reproducible candidates and reviews CAI, GC%, PolyA motifs, and assembly-site conflicts.
pip install factorforge-cds